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-   UNIX - General (http://hintsforums.macworld.com/forumdisplay.php?f=16)
-   -   Blas Help (http://hintsforums.macworld.com/showthread.php?t=12154)

Nsee 06-02-2003 02:51 PM

fink selfupdate-cvs
 
[SHS-T01-03:~] admin% fink selfupdate-cvs
sudo /sw/bin/fink selfupdate-cvs

The selfupdate function can track point releases or it can set up your Fink
installation to update package descriptions from CVS. Updating from CVS has
the advantage that it is more up to date than the last point release. On the
other hand, the point release may be more mature or have less bugs.
Nevertheless, CVS is recommended. Do you want to set up direct CVS updating?
[Y/n] y

Fink has the capability to run the CVS commands as a normal user. That has
some advantages - it uses that user's CVS settings files and allows the
package descriptions to be edited and updated without becoming root. Please
specify the user login name that should be used: [admin] admin

For Fink developers only: Enter your SourceForge login name to set up full
CVS access. Other users, just press return to set up anonymous read-only
access. [anonymous] anonymous

rm -rf /sw/fink.tmp
mkdir -p /sw/fink.tmp
chown admin /sw/fink.tmp
Checking to see if we can use hard links to merge the existing tree. Please
ignore errors on the next few lines.
touch /sw/fink/README; ln /sw/fink/README /sw/fink.tmp/README
Now logging into the CVS server. When CVS asks you for a password, just press
return (i.e. the password is empty).
su admin -c 'cvs -d:pserver:anonymous@cvs.sourceforge.net:/cvsroot/fink login'
Too many ('s.
(Logging in to anonymous@cvs.sourceforge.net)
CVS password:
cvs [login aborted]: recv() from server cvs.sourceforge.net: Connection reset by peer
### execution of su failed, exit code 1
Failed: Logging into the CVS server for anonymous read-only access failed.


shall i keep trying again

Nsee 06-02-2003 02:53 PM

after cvs password it now says this

Now downloading package descriptions...
su admin -c 'cvs -z3 -d:pserver:anonymous@cvs.sourceforge.net:/cvsroot/fink checkout -d fink dists'
Too many ('s.
cvs [checkout aborted]: recv() from server cvs.sourceforge.net: Connection reset by peer
### execution of su failed, exit code 1
Failed: Downloading package descriptions from CVS failed.

Nsee 06-02-2003 02:56 PM

sourceforge seems ok
 
at http://sourceforge.net/docman/displa...352&group_id=1

Executive Summary_» | doc feedback | support

_ _ SourceForge.net Web Site: Online
_ _ Project Shell Services: Online
_ _ Project CVS Services: Online
_ _ Download Services: Online
_ _ Project Web Services: Online
_ _ Project MySQL Database Services: Online
_ _ Project VHOST Services: Online
_ _ Compile Farm: Online
_ _ Foundry System: Online
_ _ Mailing List Services: Online

Nsee 06-02-2003 02:58 PM

this could seem to show a problem
 
at sourceforge

Our search servers are currently experiencing high load. Please try your search again later.

Nsee 06-02-2003 03:10 PM

It seems to be working
 
Currently installing atlas :-)

Nsee 06-02-2003 03:16 PM

time
 
exactly how long should all the downloading take? i really think 100 kb/s is fast enough? I better remind myself to install that QC-48 connection one day.

Nsee 06-02-2003 03:33 PM

nevermind i made a break and chose a different site to download from

hayne 06-02-2003 03:41 PM

conventions
 
It is conventional to work on your own for a while and only post to the forum when you encounter a problem that you cannot solve on your own after at least several minutes of research and trying various things.

With the current forums notification mechanism, people who have participated in a thread get an email notification when someone relies to the thread. If there is a lot of useless traffic on a thread, most people will unsubscribe from these notifications. Hence the more you post, the less likely anyone is reading it.

sao 06-03-2003 12:22 PM

Quote:

cvs [update aborted]: recv() from server cvs.sourceforge.net:
Connection reset by peer
### execution of su failed, exit code 1
Failed: Updating using CVS failed. Check the error messages above.
Nsee, that message usually means that the cvs servers are overloaded and you have to try the update later. Check the Fink FAQs:

http://fink.sourceforge.net/faq/usage-fink.php#cvs-busy

http://fink.sourceforge.net/faq/

Nsee 06-03-2003 05:07 PM

Do not worry
 
Everything Turned out very well. The Atlas install went fine, though a power outage did occur in the middle of it. After that, I installed FFTW 3.0, which works fine, but has the same file access issues as ATLAS (see below). I found FFT code for Atlas's blas, but the problem is I am not completely sure how to insert it. I will write an addendum post on this later on my research, since I did a lot of this, but pretty much, the ATLAS manual give no indication of which ATLAS_ commands allow access to the program's coding mechanism and how to specify files to mathermatically transform.

Nsee 06-11-2003 02:25 PM

FFT woes and worries
 
The FFT code I found is listed under FFT.b , FFT.m, FFT.f on http://www.netlib.org/go/; another at http://www.netlib.org/toms/545; among others.

One of the solutions I have found is at http://sourceforge.net/projects/mffmfftwrapper/, but I do not know how to implement it. If this will allow FFTW on my machine to easily take in data and do a 3D FFT or slices of it in 2D that would be great.

Remember I have fink installed along with ATLAS and FFTW.

Also I looks like I can set up the 3D coordinate data set using dynagraph (http://www.math.umbc.edu/~rouben/dynagraph/) which is installable via fink. Is this accurate.

Here is the list of sites I have visted if you are that interested:
http://www.netlib.org/go/
http://math-atlas.sourceforge.net/errata.html
http://forums.macosxhints.com/
http://forums.macosxhints.com/showth...0&pagenumber=2
http://www.fftw.org/doc/Installation...omization.html
http://www.fftw.org/doc/Installation-on-Unix.html
http://www.fftw.org/faq/section2.html
http://fink.sourceforge.net/pdb/package.php/fftw
http://www.fftw.org/doc/
http://www.fftw.org/download.html
http://www.fftw.org/install/install-Mac.html
http://www.fftw.org/faq/section4.html
http://www.fftw.org/faq/section3.html
http://www.fftw.org/faq/
http://www.fftw.org/
http://www.google.com/search?hl=en&i...+program+atlas
http://www.lohninger.com/examples_part1.html
http://www.hlrn.de/doc/atlas/
http://www.netlib.org/blas/faq.html
http://www.hlrn.de/doc/atlas/index.html
http://www.netlib.org/blas/
http://www.netlib.org/lapack/
http://www.cs.colorado.edu/~lapack/a..._routines.html
http://www.netlib.org/lapack/archives/
http://www.netlib.org/toms/545
http://sourceforge.net/softwaremap/t..._cat=98&page=2
http://www.netlib.org/lapack/lug/lapack_lug.html
http://www.fftw.org/doc/Installation...x-systems.html
http://tcl.foundries.sourceforge.net/
http://sourceforge.net/tracker/?grou...11&atid=104511
http://sourceforge.net/projects/matlisp/
http://sourceforge.net/projects/cipsoftware/
http://sourceforge.net/projects/glucas/
http://sourceforge.net/projects/sigprox/
http://sourceforge.net/projects/mffmfftwrapper/
http://www.math.umbc.edu/~rouben/dynagraph

__________________
May have found a solution but someone needs to walk me through using it. There is a very expensive application called SPIDER (http://www.wadsworth.org/spider_doc/...cs/master.html) that I can access at http://asdp.bio.bnl.gov/ using the instructions found herehttp://asdp.bio.bnl.gov/asda/LSD/EM/Spider.html. I have several problems with this, it is not a reliable solution, it limits my disk space, it is more complex in mounting, I do not acctually possess the program, the mistakes that can happen are more severe, and I also have sunk a lot of time into this first solution.

Any Thoughts on either side of the problem?

Nsee 06-20-2003 12:42 PM

On Spider
 
I am trying to use spider (see previous post), and my system's performance is sluggish. Anyone have any experience with network applications like this that has suggestions on improving speed? I have tried to make it faster, but there always seems to have a bottle neck.


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